Tuesday, May 31, 2011

New NASA Map Reveals Patterns Of Tropical Forest Carbon Storage


Benchmark map of carbon stored in Earth’s tropical forests, covering about 2.5 million hectares of forests over more than 75 countries. The map can assist efforts by countries to produce estimates of carbon emissions by providing relatively fine-scale stocks of carbon and their level of uncertainty.

A NASA-led research team has used a variety of NASA satellite data to create the most precise map ever produced depicting the amount and location of carbon stored in Earth's tropical forests. The data are expected to provide a baseline for ongoing carbon monitoring and research and serve as a useful resource for managing the greenhouse gas carbon dioxide.
Benchmark map of carbon stored in Earth’s tropical forests
Image credit: NASA/JPL-Caltech/UCLA/Winrock International/Colorado State University/University of Edinburgh/Applied GeoSolutions/University of Leeds/Agence Nationale des Parcs Nationaux/Wake Forest University/University of Oxford

The new map, created from ground- and space-based data, shows, for the first time, the distribution of carbon stored in forests across more than 75 tropical countries. Most of that carbon is stored in the extensive forests of Latin America.

"This is a benchmark map that can be used as a basis for comparison in the future when the forest cover and its carbon stock change," said Sassan Saatchi of NASA's Jet Propulsion Laboratory in Pasadena, Calif., who led the research. "The map shows not only the amount of carbon stored in the forest, but also the accuracy of the estimate." The study was published May 30 in the Proceedings of the National Academy of Sciences.

Deforestation and forest degradation contribute 15 to 20 percent of global carbon emissions, and most of that contribution comes from tropical regions. Tropical forests store large amounts of carbon in the wood and roots of their trees. When the trees are cut and decompose or are burned, the carbon is released to the atmosphere.

Tropical forest in Gabon, Africa. A NASA-led research team has used a variety of NASA satellite data to create the most precise map ever produced depicting the amount and location of carbon stored in Earth's tropical forests.
Tropical forest in Gabon, Africa
Image credit: NASA/JPL-Caltech


Previous studies had estimated the carbon stored in forests on local and large scales within a single continent, but there existed no systematic way of looking at all tropical forests. To measure the size of the trees, scientists typically use a ground-based technique, which gives a good estimate of how much carbon they contain. But this technique is limited because the structure of the forest is extremely variable, and the number of ground sites is very limited.

To arrive at a carbon map that spans three continents, the team used data from the Geoscience Laser Altimeter System lidar on NASA's ICESat satellite. The researchers looked at information on the height of treetops from more than 3 million measurements. With the help of corresponding ground data, they calculated the amount of above-ground biomass and thus, the amount of carbon it contained.

The team then extrapolated these data over the varying landscape to produce a seamless map, using NASA imagery from the Moderate Resolution Imaging Spectroradiometer (MODIS) instrument on NASA's Terra spacecraft, the QuikScat scatterometer satellite and the Shuttle Radar Topography Mission.

The map reveals that in the early 2000s, forests in the 75 tropical countries studied contained 247 billion tons of carbon. For perspective, about 10 billion tons of carbon is released annually to the atmosphere from combined fossil fuel burning and land use changes.

The researchers found that forests in Latin America hold 49 percent of the carbon in the world's tropical forests. For example, Brazil's carbon stock alone, at 61 billion tons, almost equals all of the carbon stock in sub-Saharan Africa, at 62 billion tons.

"These patterns of carbon storage, which we really didn't know before, depend on climate, soil, topography and the history of human or natural disturbance of the forests," Saatchi said. "Areas often impacted by disturbance, human or natural, have lower carbon storage."

The carbon numbers, along with information about the uncertainty of the measurements, are important for countries planning to participate in the Reducing Emissions from Deforestation and Degradation (REDD+) program. REDD+ is an international effort to create a financial value for the carbon stored in forests. It offers incentives for countries to preserve their forestland in the interest of reducing carbon emissions and investing in low-carbon paths of development.

The map also provides a better indication of the health and longevity of forests and how they contribute to the global carbon cycle and overall functioning of the Earth system. The next step in Saatchi's research is to compare the carbon map with satellite observations of deforestation to identify source locations of carbon dioxide released to the atmosphere.

Contacts and sources:
Steve Cole
NASA Headquarters, Washington

Alan Buis
Jet Propulsion Laboratory, Pasadena, Calif.


Cell Phones Are Possibly Carcinogenic Say WHO Cancer Experts in New Report

Over the last few years, there has been mounting concern about the possibility of adverse health effects resulting from exposure to radiofrequency electromagnetic fields, such as those emitted by wireless communication devices. The number of mobile phone subscriptions is estimated at 5 billion globally.

From May 24–31 2011, a Working Group of 31 scientists from 14 countries has been meeting at International Agency for Research on Cancer (IARC) in Lyon, France, to assess the potential carcinogenic hazards from exposure to radiofrequency electromagnetic fields. These assessments will be published as Volume 102 of the IARC Monographs, which will be the fifth volume in this series to focus on physical agents, after Volume 55 (Solar Radiation), Volume 75 and Volume 78 on ionizing radiation (X‐rays, gamma‐rays, neutrons, radio‐nuclides), and Volume 80 on non‐ionizing radiation (extremely low‐frequency electromagnetic fields).

The IARC Monograph Working Group discussed the possibility that these exposures might induce long‐term health effects, in particular an increased risk for cancer. This has relevance for public health, particularly for users of mobile phones, as the number of users is large and growing, particularly among young adults and children.

The IARC Monograph Working Group discussed and evaluated the available literature on the following exposure categories involving radiofrequency electromagnetic fields:
· occupational exposures to radar and to microwaves;
· environmental exposures associated with transmission of signals for radio, television and wireless telecommunication; and
· personal exposures associated with the use of wireless telephones.

International experts shared the complex task of tackling the exposure data, the studies of cancer in humans, the studies of cancer in experimental animals, and the mechanistic and other relevant data.

Risk: however, one study of past cell phone use (up to the year 2004), showed a 40% increased risk for gliomas in the highest category of heavy users (reported average: 30 minutes per day over a 10‐year period).

Conclusions

Dr Jonathan Samet (University of Southern California, USA), overall Chairman of the Working Group, indicated that "the evidence, while still accumulating, is strong enough to support a conclusion and the 2B classification. The conclusion means that there could be some risk, and therefore we need to keep a close watch for a link between cell phones and cancer risk."

"Given the potential consequences for public health of this classification and findings," said IARC Director Christopher Wild, "it is important that additional research be conducted into the long‐term, heavy use of mobile phones. Pending the availability of such information, it is important to take pragmatic measures to reduce exposure such as hands‐free devices or texting. "

The Working Group considered hundreds of scientific articles; the complete list will be published in the Monograph. It is noteworthy to mention that several recent in‐press scientific articles4 resulting from the Interphone study were made available to the working group shortly before it was due to convene, reflecting their acceptance for publication at that time, and were included in the evaluation.

A concise report summarizing the main conclusions of the IARC Working Group and the evaluations of the carcinogenic hazard from radiofrequency electromagnetic fields (including the use of mobile telephones) will be published in The Lancet Oncology in its July 1 issue, and in a few days online.

About IARC

The International Agency for Research on Cancer (IARC) is part of the World Health Organization. Its mission is to coordinate and conduct research on the causes of human cancer, the mechanisms of carcinogenesis, and to develop scientific strategies for cancer control. The Agency is involved in both epidemiological and laboratory research and disseminates scientific information through publications, meetings, courses, and fellowships.

Contacts and sources:
Nicolas Gaudin, Ph.D.
Head, IARC Communications
World Health Organization
150, cours Albert‐Thomas
69008 Lyon
France
Email com@iarc.fr
http://www.iarc.fr/en/media-centre/pr/2011/pdfs/pr208_E.pdf

 1. 237 913 new cases of brain cancers (all types combined) occurred around the world in 2008 (gliomas represent 2/3 of these). Source: Globocan 2008

2 'Limited evidence of carcinogenicity': A positive association has been observed between exposure to the agent and cancer for which a causal interpretation is considered by the Working Group to be credible, but chance, bias or confounding could not be ruled out with reasonable confidence.

3 'Inadequate evidence of carcinogenicity': The available studies are of insufficient quality, consistency or statistical power to permit a conclusion regarding the presence or absence of a causal association between exposure and cancer, or no data on cancer in humans are available.

4 a. 'Acoustic neuroma risk in relation to mobile telephone use: results of the INTERPHONE international case‐control study' (the Interphone Study Group, in Cancer Epidemiology, in press)

b. 'Estimation of RF energy absorbed in the brain from mobile phones in the Interphone study' (Cardis et al., Occupational and Environmental Medicine, in press)

c. 'Risk of brain tumours in relation to estimated RF dose from mobile phones – results from five Interphone countries' (Cardis et al., Occupational and Environmental Medicine, in press)

d. 'Location of Gliomas in Relation to Mobile Telephone Use: A Case‐Case and Case‐Specular Analysis' (American Journal of Epidemiology, May 24, 2011. [Epub ahead of print].

ABOUT THE IARC MONOGRAPHS
What are the IARC Monographs?
The IARC Monographs identify environmental factors that can increase the risk of human cancer. These include chemicals, complex mixtures, occupational exposures, physical and biological agents, and lifestyle factors. National health agencies use this information as scientific support for their actions to prevent exposure to potential carcinogens. Interdisciplinary working groups of expert scientists review the published studies and evaluate the weight of the evidence that an agent can increase the risk of cancer. The principles, procedures, and scientific criteria that guide the evaluations are described in the Preamble to the IARC Monographs.

Since 1971, more than 900 agents have been evaluated, of which approximately 400 have been identified as carcinogenic or potentially carcinogenic to humans.

Definitions
Group 1: The agent is carcinogenic to humans.
This category is used when there is sufficient evidence of carcinogenicity in humans. Exceptionally, an agent may be placed in this category when evidence of carcinogenicity in humans is less than sufficient but there is sufficient evidence of carcinogenicity in experimental animals and strong evidence in exposed humans that the agent acts through a relevant mechanism of carcinogenicity.

Group 2.
This category includes agents for which, at one extreme, the degree of evidence of carcinogenicity in humans is almost sufficient, as well as those for which, at the other extreme, there are no human data but for which there is evidence of carcinogenicity in experimental animals. Agents are assigned to either Group 2A (probably carcinogenic to humans) or Group 2B (possibly carcinogenic to humans) on the basis of epidemiological and experimental evidence of carcinogenicity and mechanistic and other relevant data. The terms probably carcinogenic and possibly carcinogenic have no quantitative significance and are used simply as descriptors of different levels of evidence of human carcinogenicity, with probably carcinogenic signifying a higher level of evidence than possibly carcinogenic.

Group 2A: The agent is probably carcinogenic to humans.
This category is used when there is limited evidence of carcinogenicity in humans and sufficient evidence of carcinogenicity in experimental animals. In some cases, an agent may be classified in this category when there is inadequate evidence of carcinogenicity in humans and sufficient evidence of carcinogenicity in experimental animals and strong evidence that the carcinogenesis is mediated by a mechanism that also operates in humans.

Exceptionally, an agent may be classified in this category solely on the basis of limited evidence of carcinogenicity in humans. An agent may be assigned to this category if it clearly belongs, based on mechanistic considerations, to a class of agents for which one or more members have been classified in Group 1 or Group 2A

Group 2B: The agent is possibly carcinogenic to humans.
This category is used for agents for which there is limited evidence of carcinogenicity in humans and less than sufficient evidence of carcinogenicity in experimental animals. It may also be used when there is inadequate evidence of carcinogenicity in humans but there is sufficient evidence of carcinogenicity in experimental animals. In some instances, an agent for which there is inadequate evidence of carcinogenicity in humans and less than sufficient evidence of carcinogenicity in experimental animals together with supporting evidence from mechanistic and other relevant data may be placed in this group. An agent may be classified in this category solely on the basis of strong evidence from mechanistic and other relevant data.

Group 3: The agent is not classifiable as to its carcinogenicity to humans.
This category is used most commonly for agents for which the evidence of carcinogenicity is inadequate in humans and inadequate or limited in experimental animals.

Exceptionally, agents for which the evidence of carcinogenicity is inadequate in humans but sufficient in experimental animals may be placed in this category when there is strong evidence that the mechanism of carcinogenicity in experimental animals does not operate in humans.

Agents that do not fall into any other group are also placed in this category.

An evaluation in Group 3 is not a determination of non‐carcinogenicity or overall safety. It often means that further research is needed, especially when exposures are widespread or the cancer data are consistent with differing interpretations.

Group 4: The agent is probably not carcinogenic to humans.
This category is used for agents for which there is evidence suggesting lack of carcinogenicity in humans and in experimental animals. In some instances, agents for which there is inadequate evidence of carcinogenicity in humans but evidence suggesting lack of carcinogenicity in experimental animals, consistently and strongly supported by a broad range of mechanistic and other relevant data, may be classified in this group.

Definitions of evidence, as used in IARC Monographs for studies in humans.

The evidence relevant to carcinogenicity from studies in humans is classified into one of the following categories:

Sufficient evidence of carcinogenicity: The Working Group considers that a causal relationship has been established between exposure to the agent and human cancer. That is, a positive relationship has been observed between the exposure and cancer in studies in which chance, bias and confounding could be ruled out with reasonable confidence. A statement that there is sufficient evidence is followed by a separate sentence that identifies the target organ(s) or tissue(s) where an increased risk of cancer was observed in humans. Identification of a specific target organ or tissue does not preclude the possibility that the agent may cause cancer at other sites.

Limited evidence of carcinogenicity: A positive association has been observed between exposure to the agent and cancer for which a causal interpretation is considered by the Working Group to be credible, but chance, bias or confounding could not be ruled out with reasonable confidence.

Inadequate evidence of carcinogenicity: The available studies are of insufficient quality, consistency or statistical power to permit a conclusion regarding the presence or absence of a causal association between exposure and cancer, or no data on cancer in humans are available.

Evidence suggesting lack of carcinogenicity: There are several adequate studies covering the full range of levels of exposure that humans are known to encounter, which are mutually consistent in not showing a positive association between exposure to the agent and any studied cancer at any observed level of exposure.

The results from these studies alone or combined should have narrow confidence intervals with an upper limit close to the null value (e.g. a relative risk of 1.0). Bias and confounding should be ruled out with reasonable confidence, and the studies should have an adequate length of follow‐up. A conclusion of evidence suggesting lack of carcinogenicity is inevitably limited to the cancer sites, conditions and levels of exposure, and length of observation covered by the available studies. In addition, the possibility of a very small risk at the levels of exposure studied can never be excluded.

In some instances, the above categories may be used to classify the degree of evidence related to carcinogenicity in specific organs or tissues.

Limited evidence of carcinogenicity: A positive association has been observed between exposure to the agent and cancer for which a causal interpretation is considered by the Working Group to be credible, but chance, bias or confounding could not be ruled out with reasonable confidence.

Inadequate evidence of carcinogenicity: The available studies are of insufficient quality, consistency or statistical power to permit a conclusion regarding the presence or absence of a causal association between exposure and cancer, or no data on cancer in humans are available.

Evidence suggesting lack of carcinogenicity: There are several adequate studies covering the full range of levels of exposure that humans are known to encounter, which are mutually consistent in not showing a positive association between exposure to the agent and any studied cancer at any observed level of exposure.

The results from these studies alone or combined should have narrow confidence intervals with an upper limit close to the null value (e.g. a relative risk of 1.0). Bias and confounding should be ruled out with reasonable confidence, and the studies should have an adequate length of follow‐up. A conclusion of evidence suggesting lack of carcinogenicity is inevitably limited to the cancer sites, conditions and levels of exposure, and length of observation covered by the available studies. In addition, the possibility of a very small risk at the levels of exposure studied can never be excluded.

In some instances, the above categories may be used to classify the degree of evidence related to carcinogenicity in specific organs or tissues.

Monday, May 30, 2011

A Mammoth Mystery Solved

A DNA-based study sheds new light on the complex evolutionary history of the woolly mammoth, suggesting it mated with a completely different and much larger species.

Mammoths were a diverse genus that roamed across Eurasia and North America during the Pleistocene era. In continental North America, at least two highly divergent species have long been recognized – woolly mammoths (Mammuthus primigenius) and Columbian mammoths (M. columbi). But new genetic evidence published in BioMed Central's open access journal Genome Biology suggests that these species may have been closely related enough to mate when they had the chance.

Skeleton of a woolly mammoth in the Brno museum Anthropos. The skeleton is composed from bones found on the famous locality Předmostí.
File:Mammoth skeleton 01.JPG
Image: Wikipedia

The research, which appears in the BioMed Central's open access journal Genome Biology, found the woolly mammoth, which lived in the cold climate of the Arctic tundra, interbred with the Columbian mammoth, which preferred the more temperate regions of North America and was some 25 percent larger.

Columbian Mammoth in the George C. Page Museum at the La Brea Tar Pits, Los Angeles
Image: Wikipedia

"There is a real fascination with the history of mammoths, and this analysis helps to contextualize its evolution, migration and ecology" says Hendrik Poinar, associate professor and Canada Research Chair in the departments of Anthropology and Biology at McMaster University.
Credi: McMaster University

Poinar and his team at the McMaster Ancient DNA Centre, along with colleagues from the United States and France, meticulously sequenced the complete mitochondrial genome of two Columbian mammoths, one found in the Huntington Reservoir in Utah, the other found near Rawlins, Wyoming. They compared these to the first complete mitochrondrial genome of an endemic North American woolly mammoth.

The Columbian mammoth was one of the largest of the mammoth species and also one of the largest elephants to have ever lived, measuring 4 meters (13 ft) tall and weighing up to 10 metric tons (11 short tons). It was 10.7 feet (3.3 m) long at the shoulder, and had a head that accounted for 12 to 25 percent of its body weight.[2] It had impressive, spiraled tusks which typically extended to 6.5 feet (2.0 m). A pair of Columbian Mammoth tusks discovered in central Texas was the largest ever found for any member of the elephant family: 16 feet (4.9 m) long

Restoration of a Columbian Mammoth
File:Mammuthus columbi Sergiodlarosa.jpg
Image: Wikipedia

"We are talking about two very physically different 'species' here. When glacial times got nasty, it was likely that woollies moved to more pleasant conditions of the south, where they came into contact with the Columbians at some point in their evolutionary history," he says. "You have roughly 1-million years of separation between the two, with the Columbian mammoth likely derived from an early migration into North American approximately 1.5-million years ago, and their woolly counterparts emigrating to North America some 400,000 years ago."

The preserved baby woolly mammoth named Dima
File:Jeune mammouth IRSNB.JPG
Credit: Wikipedia 

The woolly mammoth (Mammuthus primigenius), also called the tundra mammoth, is a species of mammoth. This animal is known from bones and frozen carcasses from northern North America and northern Eurasia with the best preserved carcasses in Siberia. They are perhaps the most well known species of mammoth.

"We think we may be looking at a genetic hybrid," says Jacob Enk, a graduate student in the McMaster Ancient DNA Centre. "Living African elephant species hybridize where their ranges overlap, with the bigger species out-competing the smaller for mates. This results in mitochondrial genomes from the smaller species showing up in populations of the larger. Since woollies and Columbians overlapped in time and space, it's not unlikely that they engaged in similar behaviour and left a similar signal."

The samples used for the analyses date back approximately 12,000 years. All mammoths became extinct approximately 10,000 years ago except for small isolated populations on islands off the coast of Siberia and Alaska.

Woolly mammoth at the Royal BC Museum, Victoria, British Columbia

File:Wooly Mammoth-RBC.jpg
Image: Wikipedia

It was generally assumed the last woolly mammoths vanished from Europe and southern Siberia about 10,000 BC, but new findings show some were still present there about 8000 BC. Woolly mammoths, as well as Columbian mammoths, disappeared also from the North American continent at the end of the last ice age. A small population of woolly mammoths survived on St. Paul Island, Alaska, until 3,750 BC,while another remained on Wrangel Island, located in the Arctic Ocean, until 1700 BC. Possibly due to their limited food supply, these animals were a dwarf variety, thus much smaller than the original Pleistocene woolly mammoth.However, the Wrangel Island mammoths should not be confused with the Channel Islands pygmy mammoth, Mammuthus exilis, which was a different species.

Woolly mammoth cave art from Dordogne, France

Image: Wikipedia

But the group does not suspect that this requires a re-write of North American mammoth evolution. "We think this individual may have been a woolly-Columbian hybrid," says Jacob Enk of the McMaster Ancient DNA Centre, the group that led the research. "Living African elephant species interbreed where their ranges adjoin, with males of the bigger species out-competing the smaller for mates.


This results in mitochondrial genomes from the smaller species showing up in populations of the larger. Since woolly and Columbian ranges periodically overlapped in time and space, it's likely that they engaged in similar behaviour and left a similar genetic signal." The team goes on to suggest that interbreeding may explain some mammoth fossils that have intermediate physical characteristics, between woollies and Columbians, sometimes assigned to the species M. jeffersonii.

They do not rule out other explanations however, and note that the only way to know for sure whether their mammoth was a hybrid is to sequence nuclear DNA from it and other mammoths. For poorly-preserved remains like those of southern-ranging Columbians, this will be a challenge. But they expect that by exploiting new cutting-edge sequencing technologies, the nuclear genomes of these amazing animals are within reach.

Mammoths belong to the family Elephantidae a diverse family that includes three living species: the African elephant (Loxodonta africana), the forest African elephant (Loxodonta cyclotis) and the Indian elephant (Elephas maximas). Mammoths and elephants belong to the order Proboscidea, which also includes the American mastodon (Mammut americanum).
Woolly Mammoth by Benjamin Waterhouse Hawkins


Contacts and sources:
Michelle Donovan
McMaster University




Citation: The Complete Columbian mammoth mitogenome suggests interbreeding with woolly mammoths 
Jacob Enk, Regis Debruyne, Alison Devault, Christine E King, Todd Treangen, Dennis O'Rourke, Steven L Salzberg, Daniel Fisher, Ross MacPhee and Hendrik Poinar
Genome Biology (in press)
The paper can be found at: http://genomebiology.com